Want to make a system faster and have the money?, Go fiber channel, after that your option is a good SAS card with great bandwidth. Don't expect a fast boot if you have a RAID controller in the comp as it has to run its own bios and parity checks.
I had convinced myself that a 4x Velociraptor setup on a true raid card (Adaptec w/Intel IO processor on board) was the best. I set bench marks close to 400MB/s in RAID5 (see below) and was truly happy. But then in practical use I would be watching a movie on Netflix (streamed through the comp) and moving files off the array to my new 6 disk NAS. I looked at the loads and the drive queue was the bottleneck not the processor. I had a Cisco gigabit switch and dual gigabit links from the NAS. I verified that I was "jack and jilling" across the connects.



Anyway to make a long story short, I replaced the velociraptors with SGE32's and was surprised. The Seagates had a better IO algorithm (Native Command Queuing II) and increased performance by 20% at 50% the price for 500GB drives.
You may not hammer your drives like I do . I download, check parity, unrar, and move files to different folders. I DL at 1.2MB/s and whatch netflix HD movies now. The only hiccup is when i decompress the rared files as this is all CPU.
If you run a game machine (as I do). Using a velociraptor as the main drive makes it scream but, for your workhorse machine it might be wise to pick a good drive with loads of cache and a good prioritization.
MY .02
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